




版權(quán)說(shuō)明:本文檔由用戶提供并上傳,收益歸屬內(nèi)容提供方,若內(nèi)容存在侵權(quán),請(qǐng)進(jìn)行舉報(bào)或認(rèn)領(lǐng)
文檔簡(jiǎn)介
1、Gene Expression Omnibus (GEO) A public repository for the archiving and distribution of gene expression data submitted by the scientific community.MIAME compliant data. (邁阿密協(xié)議)Minimum Information About a Microarray Experiment /Workgroups/MIAME/miame.htmlConvenient for deposition of gene expression d
2、ata, as required by funding agencies and journals.Curated, online resource for gene expression data browsing, query, analysis and retrieval. Gene Expression Omnibus (GEO): Gene Expression and Molecular Abundance Data RepositoryhomepageGEO ArchitecturePlatform (GPL) = the technology used and the feat
3、ures detected.Sample (GSM) = preparation and description of the sample.Series (GSE) defines a set of samples and how they are related.DataSets (GDS) sample data collections assembled by GEO staff.GEO has four kinds of data recordsSubmitters may provide raw dataOriginal microarray scansRaw quantifica
4、tion dataGPLPlatformdescriptionsGSMRaw/processedspot intensitiesfrom a singleslide/chipGSEGrouping ofslide/chip data“a single experiment”GDSGrouping ofexperimentsCurated byNCBISubmitted byExperimentalistsSubmitted byManufacturer*GEO Architectureshow statusfind documentationquery dataBasic Search: Br
5、owse PlatformsAll GEO submissions need to be associated with a platform file. These describe the features on a given platform, required to understand the data.A platform file must be submitted if one is not already present in GEO.Commercial array platform files are submitted to GEO by the manufactur
6、er.Basic Search: Browse PlatformsAccession:GEO IDTitle:brief description of platformContact:submitterdata in GEO associated with platform IDTechnology:platform typeRelease date:when file is publicly accessibleThe table can be sorted on any field except organism by clicking on the header.Specific pla
7、tform files can be found using the Find Platform anismSelect Find PlatformSelect companySelect distributionSelect speciesEnter title keywordData Retrieval: Browse SeriesData is submitted to GEO as a Series, which represents the experiment design.Selecting a Series ID brings up the Series f
8、ile summary.Data Retrieval: Series Accession PageGEO Accession Results Display OptionsScope controls what information is displayed:SelfPlatform, Samples or SeriesFamilyFormat controls how information is displayed:HTMLSOFT (Simple Omnibus Format in Text)MINiML (MIAME Notation in Markup Language)Amoun
9、t controls how much information is displayed:BriefQuickFullDataAll GEO accession results pages have the same header that allows different views and formats for the data to be displayedData Retrieval: Series Accession PageBiological sample summaryDesign summaryPublication informationPlatform (total)S
10、amples (total)Data Retrieval: Sample File SummarySample preparationHybridization and data processingPlatform Series Data Retrieval: Sample File Data TableData table field descriptionsTruncated data table from Quick viewTotal data rows and file size Supplementary raw data file Querying GEO with IDs from Papers A common way to access GEO data is through accessions from papers.O
溫馨提示
- 1. 本站所有資源如無(wú)特殊說(shuō)明,都需要本地電腦安裝OFFICE2007和PDF閱讀器。圖紙軟件為CAD,CAXA,PROE,UG,SolidWorks等.壓縮文件請(qǐng)下載最新的WinRAR軟件解壓。
- 2. 本站的文檔不包含任何第三方提供的附件圖紙等,如果需要附件,請(qǐng)聯(lián)系上傳者。文件的所有權(quán)益歸上傳用戶所有。
- 3. 本站RAR壓縮包中若帶圖紙,網(wǎng)頁(yè)內(nèi)容里面會(huì)有圖紙預(yù)覽,若沒(méi)有圖紙預(yù)覽就沒(méi)有圖紙。
- 4. 未經(jīng)權(quán)益所有人同意不得將文件中的內(nèi)容挪作商業(yè)或盈利用途。
- 5. 人人文庫(kù)網(wǎng)僅提供信息存儲(chǔ)空間,僅對(duì)用戶上傳內(nèi)容的表現(xiàn)方式做保護(hù)處理,對(duì)用戶上傳分享的文檔內(nèi)容本身不做任何修改或編輯,并不能對(duì)任何下載內(nèi)容負(fù)責(zé)。
- 6. 下載文件中如有侵權(quán)或不適當(dāng)內(nèi)容,請(qǐng)與我們聯(lián)系,我們立即糾正。
- 7. 本站不保證下載資源的準(zhǔn)確性、安全性和完整性, 同時(shí)也不承擔(dān)用戶因使用這些下載資源對(duì)自己和他人造成任何形式的傷害或損失。
最新文檔
- 紡織品防縮水處理考核試卷
- 漁業(yè)發(fā)展與環(huán)境保護(hù)的挑戰(zhàn)與解決辦法考核試卷
- 地質(zhì)勘查設(shè)備在礦山救援中的應(yīng)用考核試卷
- 社區(qū)居民健康檔案管理考核試卷
- 紡織品在汽車安全帶的安全性能考核試卷
- 荊楚理工學(xué)院《養(yǎng)老金規(guī)劃》2023-2024學(xué)年第二學(xué)期期末試卷
- 內(nèi)蒙古自治區(qū)包頭市第二中學(xué)2024-2025學(xué)年高三下學(xué)期期中模擬數(shù)學(xué)試題含解析
- 泰山護(hù)理職業(yè)學(xué)院《健美操三》2023-2024學(xué)年第一學(xué)期期末試卷
- 遼寧工程職業(yè)學(xué)院《英語(yǔ)教材教法與課程標(biāo)準(zhǔn)》2023-2024學(xué)年第二學(xué)期期末試卷
- 唐山職業(yè)技術(shù)學(xué)院《融合新聞學(xué)》2023-2024學(xué)年第二學(xué)期期末試卷
- 銀行等安全保衛(wèi)現(xiàn)場(chǎng)檢查要點(diǎn)清單
- 活動(dòng)場(chǎng)地租賃與活動(dòng)安全責(zé)任協(xié)議
- 《數(shù)據(jù)統(tǒng)計(jì)與分析》課件
- 2024年河南職業(yè)技術(shù)學(xué)院?jiǎn)握新殬I(yè)適應(yīng)性考試題庫(kù)必考題
- (二模)新疆維吾爾自治區(qū)2025年普通高考第二次適應(yīng)性檢測(cè) 英語(yǔ)試卷(含答案詳解)
- 征信系統(tǒng)AI應(yīng)用行業(yè)深度調(diào)研及發(fā)展戰(zhàn)略咨詢報(bào)告
- 書法藝術(shù)療愈在書法教育中的實(shí)踐與應(yīng)用研究
- 射頻電路封裝設(shè)計(jì)與工藝實(shí)現(xiàn)方法研究
- 2025年中國(guó)航天日知識(shí)競(jìng)賽考試題庫(kù)300題(含答案)
- 物業(yè)項(xiàng)目經(jīng)理考題及答案
- T-JSQX 0016-2024 無(wú)人駕駛配送裝備通.用技術(shù)要求
評(píng)論
0/150
提交評(píng)論